2020
1.Cai Zena#, Fan Yunshi#, Zhang Zheng, Lu Congyu, Zhu Zhaozhong, Jiang Taijiao, Shan Tongling, Peng Yousong*. VirusCircBase: a database of virus circular RNAs. Briefings in Bioinformatics, 2020，doi: 10.1093/bib/bbaa052
2.Yousong Peng, Aiping Wu, Jing Meng, Lei Yang, Dayan Wang*, Yuelong Shu*, Taijiao Jiang*. Automated recommendation of the seasonal influenza vaccine strain with PREDAC.Biosafety and Health, 2020, https://doi.org/10.1016/j.bsheal.2020.04.002
3.Zhaozhong Zhu#, Yunshi Fan#, Yang Liu, Taijiao Jiang, Yang Cao*, Yousong Peng*.Prediction of antiviral drugs against African Swine Fever Viruses based on protein-protein interaction analysis. 2020, PeerJ, https://peerj.com/articles/8855/
4.Zheng Zhang#, Sifan Ye#, Aiping Wu, Taijiao Jiang, Yousong Peng*.Prediction of receptorome for human-infecting virome. bioRxiv, 2020, doi: https://doi.org/10.1101/2020.02.27.967885
5.Yousong Peng#*, Wenfei Zhu#, Zhaomin Feng, Zhaozhong Zhu, Zheng Zhang, Yongkun Chen, Suli Liu, Aiping Wu, Dayan Wang, Yuelong Shu*, Taijiao Jiang*, Identification of genome-wide nucleotide sites associated with mammalian virulence in influenza A viruses, Biosafety and Health, 2020, https://doi.org/10.1016/j.bsheal.2020.02.006.
6.Zheng Zhang#, Fen Yu#, Yuanqiang Zou, Ye Qiu, Aiping Wu, Taijiao Jiang, Yousong Peng*. Phage protein receptors have multiple interaction partners and high expressions, Bioinformatics, 2020, btaa123, https://doi.org/10.1093/bioinformatics/btaa123
7.Aiping Wu#, Yousong Peng#, Baoying Huang#, Xiao Ding#, Xianyue Wang, Peihua Niu, Jing Meng, Zhaozhong Zhu, Zheng Zhang, Jiangyuan Wang, Jie Sheng, Lijun Quan, Zanxian Xia, Wenjie Tan*, Genhong Cheng*, Taijiao Jiang*. Genome composition and divergence of the novel coronavirus (2019-nCoV) originating in China. Cell Host & Microbe, 2020, DOI:https://doi.org/10.1016/j.chom.2020.02.001
8.Congyu Lu#, Zena Cai#, Yuanqiang Zou, Zheng Zhang, Wenjun Chen, Lizong Deng, Xiangjun Du, Aiping Wu, Lei Yang, Dayan Wang, Yuelong Shu, Taijiao Jiang *, Yousong Peng*. FluPhenotype - a one-stop platform for early warnings of the influenza A virus. Bioinformatics, 2020, btaa083, https://doi.org/10.1093/bioinformatics/btaa083
2019
9.Gao S#, Zhang W#, Lu CY, Cao MN, Cen S, Peng YS, Deng Tao*. Identification of a Type-Specific Promoter Element That Differentiates between Influenza A and B Viruses. Journal of Virology, 2019,93(23), doi: 10.1128/JVI.01164-19
10.Zhang HH, Qiu QG, Liu SJ, Hu WQ, Li JY, Liu TN, Peng YS, Ge XY, Xiao CT*. Genomic characterization of a novel astrovirus identified in Amur tigers from a zoo in China. Archives of Virology, 2019, DOI :10.1007/s00705-019-04435-2
11.Lijun Quan,Chengyang Ji,Xiao Ding,Yousong Peng,Mi Liu,Jiya Sun,Taijiao Jiang,Aiping Wu. Cluster-Transition Determining Sites Underlying the Antigenic Evolution of Seasonal Influenza Viruses. Mol Biol Evol. 2019 Jun 1;36(6):1172-1186
12.Zhaozhong Zhu#,Chao-Ting Xiao#,Yunshi Fan,Zena Cai,Congyu Lu,Gaihua Zhang,Taijiao Jiang,Yongjun Tan,Yousong Peng*, Homologous Recombination as an Evolutionary Force in African Swine Fever Viruses, Veterinary Microbiology, 2019,doi:10.1016/j.vetmic.2019.08.003
13.Zheng Zhang#, Zhaozhong Zhu#, Wenjun Chen, Zena Cai, Beibei Xu, Zhiying Tan, Aiping Wu, Xingyi Ge, Xinhong Guo, Zhongyang Tan, Zanxian Xia, Haizhen Zhu*, Taijiao Jiang*, Yousong Peng*; Cell membrane proteins with high N-glycosylation, high expression and multiple interaction partners are preferred by mammalian viruses as receptors, Bioinformatics, 2019, 35(5):723–728
14.Zheng Zhang#,Zena Cai#,Zhiying Tan,Congyu Lu,Taijiao Jiang,Gaihua Zhang,Yousong Peng*. Rapid identification of human‐infecting viruses. Transboundary and Emerging Diseases, 2019,https://doi.org/10.1111/tbed.13314
2018
15.Zena Cai#, Ya Cui#, Zhiying Tan, Gaihua Zhang, Zhongyang Tan, Xinlei Zhang*, Yousong Peng* RAEdb: a database of enhancers identified by high-throughput reporter assays. Database. bay148
16.Lu Congyu #, Liu Mi #, Wu Aiping , Shu Yuelong , Peng Yousong*, Jiang Taijiao*. (2018). PREDAV-H1: a user-friendly web server for predicting antigenic variants of influenza H1N1 viruses.SCIENCE CHINA Life Sciences , 61
17.Zhaozhong Zhu#, Zheng Zhang#, Wenjun Chen, Zena Cai, Xingyi Ge, Haizhen Zhu, Taijiao Jiang, Wenjie Tan*, Yousong Peng*. Predicting the receptor-binding domain usage of the coronavirus based on kmer frequency on spike protein. Infection, Genetics & Evolution, 2018, 61:183-184.
2017
18.Zhiying Tan, Beibei Xu, Kenli Li,Taijiao Jiang*, Yousong Peng*. (2017) Predicting the Antigenic Variant of Human Influenza A(H3N2) Virus with a Stacked Auto-Encoder Model. In: Zou B., Han Q., Sun G., Jing W., Peng X., Lu Z. (eds) Data Science. ICPCSEE 2017. Communications in Computer and Information Science, vol 728. Springer, Singaporefirst
19.Xu Beibei, Tan Zhiying, Li Kenli, Jiang Taijiao*, Peng Yousong* (2017), Predicting the host of influenza viruses based on the word vector. PeerJ 5:e3579; DOI10.7717/peerj.3579
20.Zou Yuanqiang, Li Kenli, Jiang Taijiao*, Peng Yousong*. (2017) Prediction of Cell Specific O-GalNAc Glycosylation in Human. In: Zou B., Han Q., Sun G., Jing W., Peng X., Lu Z. (eds) Data Science. ICPCSEE 2017. Communications in Computer and Information Science, vol 728. Springer, Singapore
21.Yousong Peng#, Xiaodan Li#, Hongbo Zhou, Aiping Wu, Libo Dong, Ye Zhang, Rongbao Gao, Hong Bo, Lei Yang, Dayan Wang, Xian Lin, Meilin Jin*, Yuelong Shu*, Taijiao Jiang*. Continual Antigenic Diversification in China leads to global antigenic complexity of Avian Influenza H5N1 Viruses. Scientific Reports,2017,7:43566,DOI: 10.1038/srep43566
22.Yuanqiang Zou, Zhiqiang Wu, Lizong Deng, Aiping Wu, Fan Wu, Kenli Li, Taijiao Jiang*, Yousong Peng*; cooccurNet: an R package for co-occurrence network construction and analysis. Bioinformatics, 2017, 33 (12): 1881-1882.
23.Yousong Peng*, Dayan Wang, Jianhong Wang, Kenli Li, Zhongyang Tan, Yuelong Shu, Taijiao Jiang*. A universal computational model for predicting antigenic variants of influenza A virus based on conserved antigenic structures. Scientific Reports, 2017, 7:42051 | DOI: 10.1038/srep42051
2016
24.Yousong Peng, Dayan Wang, Yuelong Shu, Taijiao Jiang. Large discrepancy between the two-way rNHT distances in hemagglutinin-inhibition assay[J]. Virologica Sinica, 2016: 1-3.
25.Youson Peng#, Lei Yang#, Honglei Li, Yuanqiang Zou, Lizong Deng, Aiping Wu, Xiangjun Du, Dayan Wang, Yuelong Shu*, Taijiao Jiang*. PREDAC-H3: A user-friendly platform for antigenic surveillance of human influenza A(H3N2) virus based on hemagglutinin sequence. Bioinformatics 2016 32: 2526-2527 (IF=5.7)
26.Wang Jianhong, Peng Yousong*, Liu Bin, Wu Zhiqiang, Deng Lizong & Jiang Taijiao*. Extracting Clinical entities and their assertions from Chinese Electronic Medical Records Based on Machine Learning[J]. 2016.
27.鲁力，邹远强，彭友松*，李肯立，蒋太交，百度指数和微指数在流感监测中的比较研究，《计算机应用研究》, 2016年第33卷第2期
2015
28.Yuanqiang Zou, Lizong Deng, Li Lu, Yousong Peng*, Taijiao Jiang*. Prediction of influenza epidemics at the province level in China using search query from “Haosou”. The 2015 12th International Conference on Fuzzy Systems and Knowledge Discovery,IEEE, 2015: 1450-1454.
29.Yuanqiang Zou, Yousong Peng, Lizong Deng and Taijiao Jiang*. Monitoring infectious diseases in the big data era. Science Bulletin, 2015, 10.1007/s11434-014-0696-5. (IF=1.6)
30.Hua Sha, Li Xiyan, Liu Mi, Cheng Yanhui, Peng Yousong, Huang Weijuan, Tan Minju, Wei Hejiang, Guo Junfeng, Wang Dayan, Wu Aiping*, Shu Yuelong*, Jiang Taijiao*. Antigenic variation of the human influenza A (H3N2) virus during the 2014-2015 winter season. SCIENCE CHINA Life Sciences, 2015. (IF=1.7)
31.Bin Liu, Yousong Peng*, Yuanqiang Zou, Jianhong Wang, Taijiao Jiang. Web-Weka Meets D3. js in Web Based Medical Data Mining[C]//2015 8th International Symposium on Computational Intelligence and Design (ISCID). IEEE, 2015, 2: 180-183.
32.Lizong Deng#, Mi Liu#, Sha Hua#, Yousong Peng, Aiping Wu, F Xiao-Feng Qin, Genhong Cheng and Taijiao Jiang. Network of co-mutations in Ebola virus genome predicts the disease lethality. Cell Research (2015) 25:753–756. doi:10.1038/cr.2015.54. (IF=12.4)
33.Mi Liu#, Xiang Zhao#, Sha Hua#, Xiangjun Du, Yousong Peng, Xiyan Li, Yu Lan, Dayan Wang, Aiping Wu*, Yuelong Shu*, Taijiao Jiang*. Antigenic Patterns and Evolution of the Human Influenza A (H1N1) Virus. Scientific Reports 2015, 5. (IF=5.6)
34.王晶晶，邹远强，彭友松*，李肯立，蒋太交，基于百度指数的登革热疫情预测研究，《计算机应用与软件》，2015
2014
35.Chunfeng Li#, Aiping Wu#, Yousong Peng, Jingfeng Wang, Yang Guo, Zhigao Chen, Hong Zhang, Yongqiang Wang, Jiuhong Dong, Lulan Wang, F. Xiao-Feng Qin, Genhong Cheng, Tao Deng& Taijiao Jiang*. Integrating computational modeling and functional assays to decipher the structure-function relationship of influenza virus PB1 protein. Scientific Reports 4,2014, doi:10.1038/srep07192 (IF=5.6)
36.Jingfeng Wang, Yousong Peng, Lili Zhao, Mengmeng Cao, Tao Hung and Tao Deng*. Influenza A virus Utilizes a Suboptimal Kozak Sequence to Fine-tune Virus Replication and Host Response. J Gen Virol,2014,doi: 10.1099/vir.0.000030. (IF=3.2)
37.Li Honglei#, Peng Yousong#*, Zou Yuanqiang, Huang Zechi, Wu Aiping, Li Kenli, Jiang Taijiao*, PREDAC-H5: A User-friendly Tool for the Automated Surveillance of Antigenic Variants for the HPAI H5N1 Virus, Infection, Genetics and Evolution (2014), doi: http://dx.doi.org/10.1016/j.meegid.2014.08.030 (IF=3.0)
38.Lili Zhao#, Yongsong Peng#, Kai Zhou#, Mengmeng Cao, Jing-feng Wang, Xue Wang, Taijiao Jiang, and Tao Deng*. New insights into the non-conserved non-coding region of the subtype-determinant HA and NA segments of influenza A viruses. J Virol. 2014 Oct;88(19):11493-503. doi: 10.1128 (IF=4.4)
39.Yousong Peng#, Yuanqiang Zou#, Honglei Li, Kenli Li, Taijiao Jiang*. Inferring the antigenic epitopes for highly pathogenic avian influenza H5N1 viruses. Vaccine, 2014, 32(6):671-676 (IF=3.6)
2013
40.Aiping Wu#, Chunhu Su#, Dayan Wang#, Yousong Peng#, Mi Liu, Sha Hua, Tianxian Li, George F. Gao, Hong Tang, Jianzhu Chen, Xiufan Liu, Yuelong Shu, Daxin Peng, and Taijiao Jiang*. Sequential Reassortments Underlie Diverse Influenza H7N9 Genotypes in China. Cell Host & Microbe. 19 September 2013. doi:10.1016/j.chom.2013.09.001. (IF=12.3)
2012
41.Xiangjun Du#, Libo Dong#, Yu Lan, Yousong Peng, Aiping Wu, Ye Zhang, Weijuan Huang, Dayan Wang, Min Wang, Yuanji Guo, Yuelong Shu* & Taijiao Jiang* (2012). Mapping of H3N2 influenza antigenic evolution in China reveals a strategy for vaccine strain recommendation. Nature communications|3:709| DOI: 10.1038/ncomms1710 (IF=11.5)
2010
42.Yu Lan, Ye Zhang, Libo Dong, Dayan Wang, Weijuan Huang, Li Xin, Limei Yang, Xiang Zhao, Zi Li, Wei Wang, Xiyan Li, Cuilin Xu, Lei Yang, Junfeng Guo, Min Wang, Yousong Peng, Yan Gao, Yuanji Guo, Leying Wen, Taijiao Jiang, Yuelong Shu* (2010). A comprehensive surveillance of adamantane resistance among human influenza A virus isolated from mainland China between 1956 and 2009. Antiviral Therapy 15:853–859 (doi: 10.3851/IMP1656) (IF=3.0)
43.Aiping Wu#, Yousong Peng#, Xiangjun Du, Yuelong Shu, Taijiao Jiang* (2010). Correlation of Influenza Virus Excess Mortality with Antigenic Variation: Application to Rapid Estimation of Influenza Mortality Burden. PLoS Comput Biol 6(8): e1000882. doi:10.1371/journal.pcbi.1000882 (IF=4.6)
